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Showing posts from November, 2016

Error during yaha installation

Error message: g++ -Wall -O3 -D COMPILE_USER_MODE -D BUILDNUM=83 -MMD -MP -c src/SW.cpp -o obj/SW.o src/SW.cpp:799:164: error: redeclaration of ‘template<unsigned char banded, unsigned char extension, unsigned char reverse, unsigned char XCutoff> int findAffineGapScore(QueryState_t*, char*, SUINT, char*, SUINT, EditOpList_t*, SUINT*, SUINT*)’ may not have default arguments [-fpermissive]  ar * rStr, SUINT rLen, EditOpList_t * list, SUINT * addedQLen = NULL, SUINT * addedRLen = NULL) make: *** [obj/SW.o] Error 1 This is because of the verison of gcc.  By default, I was using gcc/5.2.0. After changing to gcc/4.7.2, there was no ERROR anymore. 

Nice JavaScript libraries for Bioinformatics

https://github.com/biojs/biojs Scribl is a javascript, Canvas-based graphics library that easily generates biological visuals of genomic regions, alignments, and assembly data. Scribl can also be used in conventional offline pipelines, since everything needed to generate charts can be contained in a single html file. http://chmille4.github.io/Scribl/ pViz.js biojs-vis-sequence blast sever blastjs SequenceServer  blast Protael v.1.1.0 ·      JavaScript library for visualizing biological sequences and related data. Nice example websites PhosphoPICK uses  pViz.js

Nice bioinformaitcs blogs

http://blog.nextgenetics.net/ https://biowize.wordpress.com/ https://bioinfoexpert.com/ https://ngschool.eu/media http://homolog.us/blogs/ http://www.ngcrawford.com/ http://pythonforbiologists.com/index.php/measuring-memory-usage-in-python/ Webinars http://bionanogenomics.com/science/webinars/ explain my data:  http://blog.explainmydata.com/ Machine Master:  https://machine-master.blogspot.com/