Error message: Traceback (most recent call last): File "read_google_sheet.py", line 20, in <module> wks = gc.open_by_key("1jUJOlICOH6VnyuALdU2VAc_Ci_ZVwdW-xc5kr_qkJHY") File "/usr/lib/python2.7/site-packages/gspread/client.py", line 113, in open_by_key raise SpreadsheetNotFound gspread.exceptions.SpreadsheetNotFound Solved : In the json file, there is a "client_email". You need to share your file with this email.
We got error message shown as below: [/home/omicsacademy/miniconda3] >>> PREFIX=/home/omicsacademy/miniconda3 Unpacking payload ... concurrent.futures.process._RemoteTraceback: ''' Traceback (most recent call last): File "concurrent/futures/process.py", line 368, in _queue_management_worker File "multiprocessing/connection.py", line 251, in recv TypeError: __init__() missing 1 required positional argument: 'msg' ''' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "entry_point.py", line 69, in <module> File "concurrent/futures/process.py", line 484, in _chain_from_iterable_of_lists File "concurrent/futures/_base.py", line 611, in result_iterator File "concurrent/futures/_base.py", line 439, in result File "concurrent/futures/_base.py", line 388, in __get_result concurrent.futures.process.BrokenProc...
16182999 reads; of these: 16182999 (100.00%) were paired; of these: 5731231 (35.42%) aligned concordantly 0 times 4522376 (27.95%) aligned concordantly exactly 1 time 5929392 (36.64%) aligned concordantly >1 times ---- 5731231 pairs aligned concordantly 0 times; of these: 2381431 (41.55%) aligned discordantly 1 time ---- 3349800 pairs aligned 0 times concordantly or discordantly; of these: 6699600 mates make up the pairs; of these: 3814736 (56.94%) aligned 0 times 1883429 (28.11%) aligned exactly 1 time 1001435 (14.95%) aligned >1 times 88.21% overall alignment rate The Bowtie2 result summary is divided in 3 sections: Concordant alignment - In your data (4522376 + 5929392) reads align concordantly. Which is 64.59% of reads Discordant alignment - So now 5731231 reads remain which is 35.41% (100-64.59). Of these, 2381431 reads align discordantly. That is to say, of the non-concordant fraction, 41.55% of reads (2381431 reads) align discordantly. The rest - Now, remember that a...
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